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A multi-parent advanced generation inter-cross (MAGIC) population for genetic analysis and improvement of cowpea (Vigna unguiculata L. Walp.).

Author
Abstract
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Multi-parent Advanced Generation Inter-Cross (MAGIC) populations are an emerging type of resource to dissect the genetic structure of traits and improve breeding populations. We developed a MAGIC population for cowpea (Vigna unguiculata L. Walp.) from eight founder parents which are genetically diverse and carry many abiotic and biotic stress resistance, seed quality and agronomic traits relevant to cowpea improvement in the USA and sub-Saharan Africa, where cowpea is vitally important in the human diet and local economies. The eight parents were inter-crossed using structured matings to ensure the population would have balanced representation from each parent, followed by single-seed descent, resulting in 305 F8 recombinant inbred lines (RILs) each carrying a mosaic of genome blocks contributed from all founders. This was confirmed by SNP genotyping with the Illumina Cowpea Consortium Array. These lines were on average 99.74% homozygous while also diverse in agronomic traits across environments. Quantitative trait loci (QTLs) were identified for several parental traits. Loci with major effects on photoperiod sensitivity and seed size were also verified by biparental genetic mapping. The recombination events were concentrated in telomeric regions. Due to its broad genetic base, this cowpea MAGIC population promises breakthroughs in genetic gain, QTL and gene discovery, enhancement of breeding populations and, for some lines, direct releases as new varieties. This article is protected by copyright. All rights reserved.

Year of Publication
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2018
Journal
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The Plant journal : for cell and molecular biology
Date Published
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2018
ISSN Number
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0960-7412
URL
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http://dx.doi.org/10.1111/tpj.13827
DOI
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10.1111/tpj.13827
Short Title
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Plant J
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